Showing 14 results for Protein
Farhad Shokouhifar, Elahe Rabiei-Motlagh, Nahid Abbaspour, Sahba Toosi,
Volume 2, Issue 4 (3-2016)
Abstract
During the infection- while the xylem is colonized by the F. oxysporum f. sp. Lycopersici (Fol)- several effector proteins have been secreted into the xylem that suppress the plant’s defense response and enable parasitic colonization. So far, 14 effector proteins have been reported in Fol. However, there are no identified domains in their sequences. LysM effector proteins were identified in some plant pathogenic fungi and involved in sequestering chitin oligosaccharides. Here, considering the role of LysM effector proteins in plant-pathogen interactions, we searched for candidate effector proteins possessed Lysin (LysM) domains in the genome of FOL. Hence, the LysM domain was searched in the WGS data bank of Fol using Pfam tool and 17 proteins were identified. Two proteins, Fol-LysM1 and Fol-LysM3, were selected based on low molecular weight and present of signal peptide in their sequences. Prediction of the gene structures preformed using FGENESH tools and domain structures and effector characters including signal peptide, number and position of cysteine residues, disulfide bond connectivity and molecular weight of proteins were predicted. The entire nucleotide sequences of the coding region of their genes were determined by PCR and phylogeny of lysM effector proteins was studied. Furthermore, the domain organization of these proteins was compared with that of other lysM effector proteins. This is a first report of detection of lysM effector genes in Fol.
Reyhaneh Sariri, Adeleh Raeofi Masooleh, Gholam Reza Bakhshi Khaniki,
Volume 2, Issue 4 (3-2016)
Abstract
Tea was planted in Lahijan by Kashefalsataneh in 1930. The main concern about important commercial plants such as tea is the formation of ice crystals in low temperatures. This can damage the live cells leading to lowering the quality of the plant and eventually its death. Formation of reactive oxygen species (ROS) and oxidative stress is the result of various environmental stresses leading to freezing. Investigating the variations in any of these factors could help to understand the mechanism of freeze resistance in ever-green plants. The aim of the present research was to investigate lipid peroxidation, the presence of antifreeze protein and variations in the activity of some antioxidant enzymes, including superoxide dismutase (SOD), ascorbate peroxidize (APX) and catalyse (CAT) in tea leaves subjected to 20, 0, -2, -5 and -8°C in tea leaves from the north of Iran. The results showed formation of an antifreeze protein with MW of about 20 KD in response to cold stress. It was also found that the activity of SOD, APX and CAT increased in tea leaves due to cold stress. The activity of SOD increased down to -8°C. APX and CAT increased their activity down to -5°C. On the other hand, the lipid per oxidation factor, MDA, was also elevated in response to the cold stress.
Hamzeh Amiri, Leila Moazzeni,
Volume 3, Issue 1 (6-2016)
Abstract
In order to study the interaction effects of salinity and ascorbic acid on the photosynthetic pigments, soluble sugar, proline, and protein in Satureja khuzestanica plant, factorial experiment was conducted in a completely randomized design (salinity in 4 levels 0, 40, 80 and 120g in 100kg soil and ascorbic acid in 2 levels 0 and 2 mM ) with 6 replicates. The results showed that salt stress reduced photosynthetic pigments amount by increasing the soil salinity from 0 to 40g NaCl in 100kg soil and then increased by 80g NaCl in 100kg soil and again decreased by concentration of 120g NaCl in 100kg soil. The amount of solouble sugar, proline and protein by the soil salinity increased from 0 to 40g in 100kg soil and then decreased in concentration of 80g NaCl in 100kg soil, in 120g NaCl in 100 kg soil increased amount of characters. In present of ascorbic acid photosynthetic pigments amount of pigments increased by increase the soil salinity from 0 to 40g NaCl in 100kg soil and then decreased by 80g NaCl in 100kg soil and again increased by concentration of 120g NaCl in 100kg soil. But, amount of solouble sugar, proline and protein by the soil salinity decreased from 0 to 40g in 100kg soil and then increased in concentration of 80g NaCl in 100kg soil. Finally, in 120g NaCl in 100kg soil decreased amount of characters.
Azadeh Niknejad,
Volume 5, Issue 3 (12-2018)
Abstract
Molecular farming technology offers a unique advantage that almost any protein can be produced economically and safely under very controlled conditions. Besides traditional production systems, such as bacteria, yeasts, insects and mammal cell lines, plants can now be used to produce eukaryotic recombinant proteins, especially therapeutic ones. Their advantages as hosts for protein production include correct post-translational modifications, low-cost maintenance and no risk of contamination by human pathogens. The system is widely applied in agriculture and industry, especially in life science and pharmaceutical industry. The application of transgenic plants in the production of vaccines, antibodies and pharmaceutical proteins has been playing a key role in plant genetic engineering in recent years. The production of recombinant proteins plays a critical role in the production of high amounts of high-quality proteins. In this review, common problems in the production of recombinant proteins and antimicrobial peptides in plant-based expression systems are discussed and strategies for their solution are suggested. Viral vector-mediated transient gene expression in plants enables rapid production of pharmaceutical proteins such as vaccine antigens and antibodies. To conclude, plant-based systems have the potential to bring unique efficacy-enhancing features to increase the utility and effectiveness of vaccines and therapeutics.
Mahboubeh Sheikhbahaei, Farkhondeh Rezanejad, Hossein-Ali Sasan,
Volume 5, Issue 4 (3-2019)
Abstract
The flowering process in plants proceeds through the induction of an inflorescence meristem triggered by several pathways. Many of the genes associated with these pathways encode transcription factors of the MADS domain family. The MADS-domain transcription factor APETALA1 (AP1) is a key regulator of flower development. The first step to understand the molecular mechanisms under the function of each gene in a plant is identification, sequencing and phylogeny analysis of that gene. For this purpose, total RNA was isolated from flower bud of garden cress (Lepidium sativum L.) and was used for cDNA synthesis. The specific primers were designed based on nucleotide sequence alignment of AP1 homologus genes from plants of the same family Brassicaceae and were used in RT-PCR. After observing its electrophoretic pattern and ensuring the quality of PCR product, the amplicon was sent for sequencing. After receiving the results of sequencing, the sequence examined with BLAST, MUSCLE, Gene Runner and MEGA6 softwares. The results indicated amplification of 787 nucleotides fragment that named LsAP1 and was recorded by accession number KP070728 in NCBI database. The studies show high similarity and overlapping of gene bank sequences with LsAP1 illative protein. According to these results, LsAP1 may play a similar role as AP1 in flower induction and could act as a flower meristem identity gene in Lepidium sativum L.
Somayeh Farahmand, Faezeh Fatemi, Reza Hajihosseini,
Volume 6, Issue 1 (5-2019)
Abstract
In Acidithiobacillus ferrooxidans, the proteins present in the electron transfer pathway cause ferrous iron oxidation which leads to uranium extraction. The relationship between gene sequence and uranium extraction has not been investigated yet. Based on the changes in uranium extraction, the changes of rus gene sequence can reveal the direct and accurate role of this protein. For this purpose, a random mutation was induced in native Acidithiobacillus sp. FJ2 by two doses of 0.8% and 1% of DES. Then, the bacteria was transferred into a medium which contained 50% uranium ore to carry out the bioleaching process. After measuring the amount of the extracted uranium, iron, Eh and pH, genomic DNA was extracted to investigate the rusticyanin gene (rus) sequence sent for sequencing after performing PCR. Then, the wild-type gene sequence was compared with the mutant by Bioedit v7.2.5 software. The results showed that uranium extraction increased by mutant bacteria with DES 1% between 7-11 days in comparison with wild bacteria. However, there has been no change in the functional areas of the rusticyanin gene. It seems that DES affected other effective genes in the electron transport chain or regulatory areas, which required further studies.
Shahin Esmaeilnezhad, Farhad Mashayekhi,
Volume 7, Issue 2 (7-2020)
Abstract
Amniotic fluid (AF) is essential for fetal development and maturation during pregnancy. The levels of proteins in AF have been determined in many studies to screen for potential biomarkers of pregnancy-associated abnormalities. Alpha-fetoprotein (AFP) is a major AF and plasma protein produced by the yolk sac and the liver during the fetal period. APF serum concentrations are commonly used for screening of many syndromes. Electromagnetic fields (EMFs) were reported to change gene expression in the embryo and in adults. The aim of this research was to assess the effects of 50hertz/1millitesla EMFs on AFP expression in the AF in the mouse embryo. AF samples were obtained from pregnant mice in gestational days 16 and 18. AFP relative expression was studied by western blotting. The results of this study showed that AFP relative expression increases in the EMF-treated AF as compared with either SHAM or control groups. It is concluded that EMF increases the AFP relative expression in the AF. It is also suggested that EMF may change the AFP expression in the AF by altering the expression of genes, including AFP, and/or by affecting the permeability of blood barriers.
Roghayeh Heydari, Ramin Ezzati, Mohammadali Zahed,
Volume 7, Issue 3 (11-2020)
Abstract
The purpose of this study was to investigate the effect of Damavand volcanic ash on the morphological and physiological characteristics of beans as a factorial experiment in a completely randomized design. The results showed that the highest dry leaf weight was observed in 100 mg/L treatment per liter of volcanic ash (0.0099 g). The results also showed that the optimal sugar content of the soluble sugar at 100 mg/L of volcanic ash was 0.650 (mg/g D.W.). The highest protein content and optimal peroxidase activity were observed with 0.68 (mg/g F.W.) and 0.082 (A470/mg/protein), respectively. Therefore, it can be argued that volcanic ash may increase plant growth and biosynthesis of organic compounds such as iron and aluminum.
Manoj Kumar, Rakesh Ranjan, Amar Kumar, Manoranjan Prasad Sinha, Rohit Srivastava, Sweta Subarna, Samir Kumar Mandal,
Volume 7, Issue 4 (2-2021)
Abstract
Punica granatum leaf extracts have been used since time immemorial in traditional medicines. It is used for its antioxidant properties. Green nanoparticle synthesis is an emerging field which has opened an entirely different scope for medicinal formulations. It has been reported by many users that the green nanoparticles are more effective medicines as compared with their simple extracts. Thus, in order to evaluate these speculations, the present work was undertaken to assess the hepatoprotective activity of silver nanoparticles synthesized using aqueous leaf extract of Punica granatum in comparison with the aqueous extract. After CCl4 intoxication the serum bilirubin total increased significantly (p<0.05) and the total protein level decreased significantly (p<0.05) as compared with the control group; in addition, alkaline phosphatase activity, aspartate aminotransferase activity and alanine transaminase activity increased significantly (p<0.05). The CCl4 intoxicated rats were treated with aqueous leaf extract and synthesized nanoparticles, the results clearly revealed that the aqueous extract of Punica granatum showed hepatoprotective effect, as the liver profile altered by CCl4 toxicity, recovered to normal control values. Moreover, the nanoparticles synthesized using aqueous leaf extract of Punica granatum were comparatively more effective as hepatoprotective agent than the aqueous extract of Punica granatum.
Leila Zarandi-Miandoab, Nader Chaparzadeh, Hamid Fekri-Shali,
Volume 8, Issue 2 (7-2021)
Abstract
In order to investigate the effects of salinity and magnesium (Mg) on the growth parameters, physiological characteristics and content of some metabolites in Syrian bean-caper (Zygophyllum fabago) plants, a factorial experiment with completely randomized design was performed and carried out in perlite with Hoagland solution. The treatments were combinations of two levels of salinity (0 and 300 mM NaCl) and three levels of Mg concentration (2, 4 and 8 mM; 0, 2 and 6 mM over the standard Mg content of Hoagland medium, 2mM, respectively). The simultaneous effect of salinity and Mg did not change the fresh weight of the plants, but increased the dry weight by 50%. Salinity reduced the leaf area, but the presence of Mg improved and even increased the leaf area of the plants. The Mg reduced NAR, while increased LAR and RLGR. Salinity decreased the RLGR. The simultaneous effect of salinity and Mg increased and improved RGR, LWR, RLGR. The tolerance index in saline treatments increased with the presence of Mg, but the R/S ratio showed a significant increase only in salinity condition, however, the presence of Mg moderated it. Salinity reduced the photosynthetic pigments, while the presence of Mg ameliorated the decrease. As a result, salinity and Mg increased the total sugar content of the leaf and reduced the total sugar content of the root. Salinity and Mg reduced the total protein content of all the organs of the plant specimens studied. In general, salinity had a negative effect on the physiological parameters of the Zygophyllum fabago plants, while the application of supplementary Mg improved the growth indices and increased the plants tolerance against salinity.
Mahdieh Garshasbi, Adeleh Divsalar,
Volume 8, Issue 3 (10-2021)
Abstract
Nanotechnology-based targeting drug delivery systems have a considerable potential in medicine. Therefore, the present study aimed to designe, synthesise and characterize a nanodrug with beta lactoglobulin coating including oxali-palladium with and without folate and to compare their anti-cancer effects. The physicochemical properties of nanocapsules were studied by Dynamic light scattering (DLS), atomic force microscopy (AFM) and scanning electron microscopy (SEM). Finally, the anticancer activities of nanodrugs were investigated against human colorectal cancer cell line of HCT116 by MTT and flowcytometry methods. The results of Dynamic light scattering (DLS), scanning electron microscopy (SEM) and atomic force microscopy (AFM) showed that the average size of nanocapsules with folate were less than 40 nm. Cytotoxicity results proved the dose- and time-dependent antiproliferation and anicancer activities of nanocapsules (with folate) against HCT116. Finally, it could be concluded that folate increase anticancer activity of nanodrugs and it might be considered as a new candidate in the design and synthesis of new drugs in cancer treatment.
Golnaz Parvizi Fard, Lale Solouki, Mostafa Zakariazadeh, Hossein Haghaei, Somaieh Soltani,
Volume 9, Issue 3 (12-2022)
Abstract
Human serum albumin is one of the most important blood proteins that has the ability to bind a wide range of compounds and different drugs. Hence, knowing how drugs bind to albumin is crucial to understand their pharmacokinetics and pharmacodynamic properties. The binding of drugs to protein affects the drug's excretion, distribution and interaction in the target tissues. Nicotinamide (NA) is a safe and inexpensive medical supplement that used to prevent and treat vitamin B3 deficiency. In this research, the molecular mechanism of the interaction between nicotinamide and human serum albumin was studied by the utilization of spectroscopic and molecular docking methods. The effects of temperature, acidic/basic pHs, metal ions, urea, and glucose on the interaction between nicotinamide and human serum albumin were also investigated. The spectroscopic studies indicated that the interaction between nicotinamide and human serum albumin is mainly controled by hydrophobic forces and the interaction is spontaneous. The number of binding site and binding constant is 1 and 4.6×104 (L/mol), respectively, which were increased in the presence of glucose. The presence of metallic ions and basic pH decreased the binding constant of nicotinamide to albumin. The obtained results indicated that nicotinamide tend to binds to the similar sites wherever the molecules with acidic moieties bind. The results could be helpful to interpret the mechanisms of actions of nicotinamide in the various physiological phenomena in the human body.
Mahdi Alijanianzadeh, Alireza Jalalvand, Rasoul Khalilzadeh, Maryam Abdolirad,
Volume 9, Issue 4 (3-2023)
Abstract
S-layer proteins of Deinococcus radiodurans are the best self-assemble systems among other proteins that have an essential role in the fabrication of nanowires. Therefore, the purification of these proteins is necessary. The purpose of this research was to optimize the purification of s-layer protein from D. radiodurans with the response surface method. The three factors of SDS concentration, incubation time and mass percent in five levels were considered, and 20 runs were designed by Design-Expert software with a central composite method. Each run includes microbe culture, mass cell preparation, microbe incubation in specific SDS concentration and time and mass percent, separation of the bacteria from detergent with a centrifuge at 5000g, sedimentation of s-layer proteins from detergent solution with a centrifuge at 20000g, determination of protein concentration, and protein purity by Bradford and SDS-PAGE methods, respectively. Finally, the data obtained were analyzed. Analysis of the results demonstrated that at the 95% confidence level, the effect of the detergent concentration factor on the purified protein percent was more than other factors. The optimization results of factors are 5.64% SDS concentration, 7.33% mass percent, and 3 hours incubation time. At optimized conditions the protein concentration and purity percent were obtained 0.584 mg/ml and 47.61% respectively.
Dr Fateme Mousavi,
Volume 10, Issue 4 (3-2024)
Abstract
Quinoa seed (Chenopodium quinoa) is considered a unique food source due to its rich protein content and high antioxidant activity related to polyphenols. In the present study, with the aim of selecting the quinoa seeds to send to space, the response of protein content, phenol, flavonoid, antioxidant capacity, and the germination index of its seeds to simulated vacuum conditions of space was evaluated. The results showed a significant increase in the seed germination index for the vacuum-treated group compared to the control group. Total phenolic and flavonoid content was higher in vacuum-treated seeds compared to the control group. Vacuum conditions significantly increased the antioxidant capacity of quinoa seeds. The total seed protein content in the vacuum-treated and control groups was 25 and 35 mg/ml, respectively. The seed protein profile showed 13 distinct protein bands in the molecular weight range of 15 to 70 kilodaltons. The intensity of protein bands was significantly different between vacuum treatment and control groups. Structural changes in the seed pericarp as well as water and oil exit from the seeds under vacuum conditions can be the causes of different biochemical and physiological responses of quinoa seeds in the present study.
