Volume 6, Issue 2 (8-2019)                   nbr 2019, 6(2): 268-274 | Back to browse issues page


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Shahriari Moghadam M, Abtahi B, Ebrahimipour G. The identification of protein changes in Celeribacter persicus SBU1 after degrading phenanthrene . nbr 2019; 6 (2) :268-274
URL: http://nbr.khu.ac.ir/article-1-3072-en.html
University of Zabol , Mohsen.mshahriari@gmail.com
Abstract:   (3971 Views)
Organisms in different environmental conditions express different genes, which result in different protein expressions. These changes result from the adaptation of the organism to environmental conditions such as the presence of toxic substances. This study aimed to investigate the changes in protein expression in Celeribacter persicus SBU1 isolated from Nayband Bay mangrove forests, cultured in the medium containing phenanthrene as the sole source of carbon and energy. For this purpose, C. persicus SBU1 was cultured on mineral salt medium containing phenanthrene and sodium acetate as treatment and control, respectively. After the extraction of total protein, changes in protein expression were evaluated by SDS-PAGE. Proteins were identified by MALDI-TOF-TOF MS. After evaluating changes in protein content, two bands which showed greater variation in comparison with the control treatment (increased protein expression) were detected. The identified proteins included one ligand-gated channel protein and one unknown protein. In general, the results of this study showed significant changes in the protein content of C. persicus SBU1 after using phenanthrene. The up-regulation of ligand-gated channel protein signified the role of this protein in phenanthrene molecules transport in and out of the cells.
Full-Text [PDF 643 kb]   (1123 Downloads)    
Type of Study: Original Article | Subject: Microbiology
Received: 2018/01/19 | Revised: 2019/09/3 | Accepted: 2018/10/3 | Published: 2019/07/30 | ePublished: 2019/07/30

References
1. Bateman, J.N., Speer, B., Feduik, L. and Hartline, R.A. 1986. Naphthalene association and uptake in Pseudomonas putida. - J. Bacteriol. 166: 155-161 [DOI:10.1128/jb.166.1.155-161.1986]
2. Bradford, M.M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. - Anal. Biochem. 72: 248-254. [DOI:10.1006/abio.1976.9999]
3. Bugg, T., Foght, J.M., Pickard, M.A. and Gray, M.R. 2000. Uptake and active efflux of polycyclic aromatic hydrocarbons by Pseudomonas fluorescens LP6a. - Appl. Environ. Microbiol. 66: 5387-5392. [DOI:10.1128/AEM.66.12.5387-5392.2000]
4. Cao, J., Lai, Q., Yuan, J. and Shao, Z. 2015. Genomic and metabolic analysis of fluoranthene degradation pathway in Celeribacter indicus P73T. - Sci. Rep. 5: 7741. [DOI:10.1038/srep07741]
5. Chang, B.V., Chang, I.T. and Yuan, S.Y. 2008. Anaerobic degradation of phenanthrene and pyrene in mangrove sediment. - Bull. Environ. Contam. Toxicol. 80: 145-149. [DOI:10.1007/s00128-007-9333-1]
6. Demaneche, S., Meyer, C., Micoud, J., Louwagie, M., Willison, J.C. and Jouanneau, Y. 2004. Identification and functional analysis of two aromatic-ring-hydroxylating dioxygenases from a Sphingomonas strain that degrades various polycyclic aromatic hydrocarbons. - Appl. Environ. Microbiol. 70: 6714-6725. [DOI:10.1128/AEM.70.11.6714-6725.2004]
7. Finnerty, W., and Singer, M. 1985. Membranes of hydrocarbon-utilizing microorganisms. - In Ghosh, B.K. (ed.), Organization of prokaryotic cell membranes, vol. III: 1-44. - CRC Press, Inc., Boca Raton, Fla.
8. Guo, C., Zhou, H., Wong, Y. and Tam, N. 2005. Isolation of PAH-degrading bacteria from mangrove sediments and their biodegradation potential. - Mar. Pollut. Bull. 51: 1054-1061. [DOI:10.1016/j.marpolbul.2005.02.012]
9. Ke, L., Wang, W.Q., Wong, T.W.Y., Wong, Y.S. and Tam, N.F.Y. 2003. Removal of pyrene from contaminated sediments by mangrove microcosms. - Chemosphere 51: 25-34. [DOI:10.1016/S0045-6535(02)00811-1]
10. Keum, Y.S., Seo, J.S., Li, Q.X. and Kim, J.H. 2008. Comparative metabolomic analysis of Sinorhizobium sp. C4 during the degradation of phenanthrene. - Appl. Microbiol. Biotechnol. 80: 863-872. [DOI:10.1007/s00253-008-1581-4]
11. Kim, S.J., Jones, R.C., Cha, C.J., Kweon, O., Edmondson, R.D. and Cerniglia, C.E. 2004. Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium vanbaalenii PYR-1 using two-dimensional polya-crylamide gel electrophoresis and de novo sequencing methods. - Proteomics. 4: 3899-3908. [DOI:10.1002/pmic.200400872]
12. Krivobok, S., Kuony, S., Meyer, C., Louwagie, M., Willison, J.C. and Jouanneau, Y. 2003. Iden-tification of pyrene-induced proteins in Mycobac-terium sp. strain 6PY1: evidence for two ring-hydroxylating dioxygenases. - J. Bacteriol. 185: 3828-3841. [DOI:10.1128/JB.185.13.3828-3841.2003]
13. Lee, S.E., Seo, J.S., Keum, Y.S., Lee, K.J. and Li, Q.X. 2007. Fluoranthene metabolism and associated proteins in Mycobacterium sp. JS14. - Proteomics 7: 2059-2069. [DOI:10.1002/pmic.200600489]
14. Li, C.H., Wong, Y.S.,and Tam, N.F. 2010. Anaerobic biodegradation of polycyclic aromatic hydrocarbons with amendment of iron (III) in mangrove sediment slurry. - Bioresour Technol. 101: 8083-8092. [DOI:10.1016/j.biortech.2010.06.005]
15. Liang, Y., Gardner, D.R., Miller, C.D., Chen, D., Anderson, A.J., Weimer, B.C. and Sims, R.C. 2006. Study of biochemical pathways and enzymes involved in pyrene degradation by Mycobacterium sp. strain KMS. - Appl. Environ. Microbiol. 72: 7821-7828. [DOI:10.1128/AEM.01274-06]
16. Nesatyy, V.J. and Suter, M.J.F. 2007. Proteomics for the analysis of environmental stress responses in organisms. - Env. Sci. Tech. 41: 6891-6900. [DOI:10.1021/es070561r]
17. Nikaido, H. 1996. Multidrug efflux pumps of gram-negative bacteria. - J. Bacteriol. 178: 5853-5859. [DOI:10.1128/jb.178.20.5853-5859.1996]
18. Qin, W., Zhu, Y., Fan, F., Wang, Y., Liu, X., Ding, A., and Dou, J. 2017. Biodegradation of benzo(a)pyrene by Microbacterium sp. strain under denitrification: Degradation pathway and effects of limiting electron acceptors or carbon source. - Biochem. Eng. J. 121: 131-138. [DOI:10.1016/j.bej.2017.02.001]
19. Schlegel, H. 1992. General microbiology. - Cambridge University Press. 608.
20. Seo, J.S., Keum, Y.S. and Li, Q.X. 2009. Bacterial degradation of aromatic compounds. - Int. J. Env. Res. Pub. He. 6: 278-309. [DOI:10.3390/ijerph6010278]
21. Sikkema, J., de Bont, J.A. and Poolman, B. 1994. Interactions of cyclic hydrocarbons with biological membranes. - J. Biol. Chem. 269: 8022-8028.
22. Tam, N.F., Guo, C.L., Yau, W.Y. and Wong, Y.S. 2002. Preliminary study on biodegradation of phenan-threne by bacteria isolated from mangrove sediments in Hong Kong. - Mar. Pollut. Bull. 45: 316-324. [DOI:10.1016/S0025-326X(02)00108-X]
23. Tian, Y., Liu, H.J., Zheng, T.L., Kwon, K.K., Kim, S.J. and Yan, C.L. 2008. PAHs contamination and bacterial communities in mangrove surface sediments of the Jiulong River Estuary, China. - Mar. Pollut. Bull. 57: 707-715. [DOI:10.1016/j.marpolbul.2008.03.011]
24. Ugochukwu, U.C. and Fialips, C.I. 2017. Removal of crude oil polycyclic aromatic hydrocarbons via organoclay-microbe-oil interactions. - Chemosphere 174: 28-38. [DOI:10.1016/j.chemosphere.2017.01.080]
25. Wei, K., Yin, H., Peng, H., Liu, Z., Lu, G. and Dang, Z. 2017. Characteristics and proteomic analysis of pyrene degradation by Brevibacillus brevis in liquid medium. - Chemosphere 178: 80-87. [DOI:10.1016/j.chemosphere.2017.03.049]
26. White, S.H., King, G.I. and Cain, J.E. 1981. Location of hexane in lipid bilayers determined by neutron diffraction. - Nature 290: 161-163. [DOI:10.1038/290161a0]
27. Whitman, B.E., Lueking, D.R. and Mihelcic, J.R. 1998. Naphthalene uptake by a Pseudomonas fluorescens isolate. - Can. J .Microbiol. 44: 1086-1093. [DOI:10.1139/w98-110]
28. Yu, S.H., Ke, L., Wong, Y.S. and Tam, N.F.Y. 2005. Degradation of polycyclic aromatic hydrocarbons by a bacterial consortium enriched from mangrove sediments. - Environmenton 31: 149-154. [DOI:10.1016/j.envint.2004.09.008]
29. Yuan, S.Y., Chang, J.S., Yen, J.H. and Chang, B.V. 2001. Biodegradation of phenanthrene in river sediment. - Chemosphere 43: 273-278. [DOI:10.1016/S0045-6535(00)00139-9]
30. Yun, S.H., Choi, C.-W., Lee, S.-Y., Lee, Y.G., Kwon, J., Leem, S.H. and Kwon, K.K. 2014. Proteomic characterization of plasmid pLA1 for biodegradation of polycyclic aromatic hydrocarbons in the marine bacterium, Novosphingobium pentaromativorans US6-1. - PloS One 9: 1-11. [DOI:10.1371/journal.pone.0090812]
31. Zhou, H.W., Luan, T.G., Zou, F. and Tam, N.F.Y. 2008. Different bacterial groups for biodegradation of three- and four-ring PAHs isolated from a Hong Kong mangrove sediment. - J. Hazard Mater. 152: 1179-1185. [DOI:10.1016/j.jhazmat.2007.07.116]

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